PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010788001
Common NameVIT_05s0102g00690
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 268aa    MW: 30495.3 Da    PI: 8.4349
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010788001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.62.1e-28103190291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  GSVIVT01010788001 103 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHTLTP 190
                        ******************************************9988..9**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-25103190IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MIGSEYKKTI SLCDRQNSPN FMDFGVGGDA NGEVVVRSSV DMVRTSDESE MGGNSVEVAF  60
QSSEDNKLNQ DSSGTEIIPV VEPYVDEPYV GQEFESEAAA HAFYNAYATR VGFIIRVSKL  120
SRSRRDGSAI GRALVCNKEG YRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF  180
VKEHTHTLTP GKGRRDLIYD QYPNEHDKIR ELSQQLAVEK KRAATYKRHL EMVFEYIEEH  240
NESLSKKIQH IVDSVRDMEN KEKQNHR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.290980.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4505960.0AM450596.2 Vitis vinifera contig VV78X207993.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267960.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBLD7U1S10.0D7U1S1_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00690.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10299610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.29e-97FAR1 family protein