PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010765001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 269aa    MW: 31231.4 Da    PI: 5.7059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010765001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.44.3e-27100190190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY eYAk+vGF++r+++ ++s +n  ++ r+fvCs+eg+r+ ++++++  r   +r+ tr gCka++++  ++ +kw+vtk++ eHnH+l+
  GSVIVT01010765001 100 NFYYEYAKRVGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHTSRK-DRVlpPRPITREGCKAMIRLAARDGNKWVVTKFVREHNHKLM 190
                        6*****************************************9998832.222459**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-24100190IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRDFLYWRGF WIQIKNRTLK NIMEGTSGRP DFVESDGGSD DETFENFGEH EGSEDGLLSC  60
DSPVLNEELI LREPTMEGLS MQNLEPFSGM TFPSLDDARN FYYEYAKRVG FTIRTNRIRH  120
SLKNMAVIGR DFVCSREGFR AAKHTSRKDR VLPPRPITRE GCKAMIRLAA RDGNKWVVTK  180
FVREHNHKLM THCKFSGELP IINILSEEEK DKKIQDLYNE LQLERERSAG FQQQLGMILK  240
DLEEHADFMS VRVEDVVNKM REIELDDQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.180360.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4654590.0AM465459.2 Vitis vinifera contig VV78X090921.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650577.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLF6HYS50.0F6HYS5_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-41FAR1 family protein