PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010638001
Common NameLOC100252191, VIT_16s0100g00320
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 443aa    MW: 48357.5 Da    PI: 7.7501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010638001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10119140426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +lC+++++ G C+yG++CkF H+
  GSVIVT01010638001 119 KLCNYWLQ-GNCSYGEKCKFLHS 140
                        69******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.0662248IPR000571Zinc finger, CCCH-type
SMARTSM003562.82347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7116140IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6117141IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7119140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-8119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.6E-46140435IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.2E-5146185IPR001680WD40 repeat
SuperFamilySSF509786.59E-47150436IPR017986WD40-repeat-containing domain
PfamPF004001.3E-4150185IPR001680WD40 repeat
PROSITE profilePS5008213.917153194IPR001680WD40 repeat
PROSITE profilePS5029421.41153402IPR017986WD40-repeat-containing domain
PRINTSPR003201.4E-6172186IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780172186IPR019775WD40 repeat, conserved site
SMARTSM0032016225262IPR001680WD40 repeat
SMARTSM003200.0012269306IPR001680WD40 repeat
PfamPF004000.0028273306IPR001680WD40 repeat
PROSITE profilePS5008212.948276315IPR001680WD40 repeat
PROSITE patternPS006780293307IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-6293307IPR020472G-protein beta WD-40 repeat
SMARTSM003203.4E-4309346IPR001680WD40 repeat
PfamPF004000.001311345IPR001680WD40 repeat
PRINTSPR003201.4E-6333347IPR020472G-protein beta WD-40 repeat
SMARTSM003205.8350393IPR001680WD40 repeat
SMARTSM003201.5396433IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDVDEHGNKR VFQRLGASND SGKQHKVCYH WRAGRCNKFP CPYLHRELPA PPPQQHQPFI  60
SNGSSSKRPN QGVHDDRSFS GARRSPNFNP TWGRVHGAGA GNRAQGSGAG NRVFRKIEKL  120
CNYWLQGNCS YGEKCKFLHS WSVGDCFSSL TQLEGHQKVV SGIALPSGSD KLYTGSKDET  180
VRIWDCQSGQ CTGVVNLGGE VGCMISEGPW LFVGIPNVVK AWHTQNNTEL SLSGPTGQVY  240
ALVVGNDLLF AGVQDGAILA WKFNAVSNCF EPAASLKGHT QSVITLVVGA NRLYSGSMDR  300
SIRVWNLENL QCLQTLTEHT SVVMSLLCWD QFLLSCSLDG TVKVWVATES GNLEVTYTHN  360
EEQGVLYLCG MHDPEAKPVL LCSCNDNTVR VYDLPSFSER GKIFAREGIR AIQIGPGGLF  420
FTGDGSGQVR VWNWSTEAAA PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-201494367323Tako8
6g6n_A8e-201494367323Tako8
6g6n_B8e-201494367323Tako8
6g6n_C8e-201494367323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.15450.0bud| flower| fruit| inflorescence| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3827330.0FQ382733.1 Vitis vinifera clone SS0ABG46YH04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280396.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLD7TMY10.0D7TMY1_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1