PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010510001
Common NameLOC100260828, VIT_01s0010g03850
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CAMTA
Protein Properties Length: 969aa    MW: 108321 Da    PI: 6.12
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010510001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.11.3e-56101252116
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        lke + rwlk+ e++ iL+n+ekh+lt+e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+++cyYah+e+np
  GSVIVT01010510001  10 LKEaQIRWLKPAEVLFILQNYEKHQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGTVETINCYYAHGEQNP 101
                        566699************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhyle 116
                        +fqrr+yw+L+ ++e+ivlvhy+e
  GSVIVT01010510001 102 SFQRRSYWMLDPAYEHIVLVHYRE 125
                        **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.2936132IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-789127IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4812125IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-10423511IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.76E-19426509IPR014756Immunoglobulin E-set
CDDcd001021.47E-5426510No hitNo description
PfamPF018331.4E-9427509IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.5E-14622719IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.406624716IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.15E-15626719IPR020683Ankyrin repeat-containing domain
CDDcd002042.73E-12629716No hitNo description
PfamPF127963.1E-7644717IPR020683Ankyrin repeat-containing domain
SMARTSM002485.2E-4657686IPR002110Ankyrin repeat
PROSITE profilePS5008811.22657689IPR002110Ankyrin repeat
SMARTSM000159.7774796IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693775801IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.3E-7777877IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.2825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151826855IPR000048IQ motif, EF-hand binding site
PfamPF006120.02828846IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3E-5848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.81849873IPR000048IQ motif, EF-hand binding site
PfamPF006125.5E-5851870IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MSGFDFNDLL KEAQIRWLKP AEVLFILQNY EKHQLTQEPP QKPTSGSLFL FNKRVLRFFR  60
KDGHSWRKKK DGRTVGEAHE RLKVGTVETI NCYYAHGEQN PSFQRRSYWM LDPAYEHIVL  120
VHYREISEGR HSPGSNSLLS SGSTQTQSPS SYNSQIPGST SAVSELYDSP QNVCSPGSVE  180
VSSEVVMKSN VREHLDRING IGDFGNSSEL EVSQALRRLE EQLSLNDDSL EAIDAFQSQN  240
ENMNGLETLE YERKMSKQDQ HAVLLSGPEY TVHDQHYTGY AGCSTDDLML PQDAGDNREH  300
YHHQSTVEGR DTLSWEEIME FCKSSSGVDS KEKHKSYGNE RPLSSSGRGA AEKQQNSHWL  360
NVDGTNSESS SILLPSEVEN LNFPEYKTNT HAVNSDYYRM LFDEGQIEVP LESGPSLTLA  420
QKQRFTICEI SPEWGFSSET TKVIIAGSFL CHPSECAWTC MFGDIEVPVQ IIQEGVICCQ  480
APPHPPGKVT LCITSGNRES CSEVREFEYH AKTSSCTHCN LSQTEATKSP EELLLLARFV  540
QMLLFDPLMH RRDGIESGID LLIKSKADED SWDCIIEALL FGSGTSSSTV DWLLQELLKD  600
KLHQWLSSRS REGCESFGCS LSKKEQGMIH MIAGLGFEWA LNPILNTGVS INFRDINGWT  660
ALHWAARFGR EKMVAALIAS GASAGAVTDP SPQDPTGKTA ASIASTSGHK GLAGYLSEVA  720
VTSHLSSLTL EESELSKGSA EVEAEITVNN ISKGGLAASE DQIPLKDALA AVRNTTQAAA  780
RIQAAFRAHS FRQKQQREAD APYVDEYGIS SDDIQELSAM SKLAFRNSAA LSIQKKYRGW  840
KGRKDFLTLR QKVVKIQAHV RGYHVRKNYK VICWAVGILD KVILRWRRRG AGLRGFRPES  900
EPIDENEDED IRKAFRRQKV DGAINEAVSR VLSMVESPEA REQYHRVLER FHQAKQSHFR  960
HDSAFEAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.32590.0bud| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4546120.0AM454612.1 Vitis vinifera contig VV78X060641.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656058.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X3
RefseqXP_010656066.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLD7TB030.0D7TB03_VITVI; Uncharacterized protein
STRINGVIT_01s0010g03850.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]