PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010496001
Common NameLOC100254075, VIT_01s0010g03710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 419aa    MW: 45940.3 Da    PI: 8.8028
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41127204178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC+ dls+ak+yhr+h+vCe h+k+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  GSVIVT01010496001 127 RCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQP 204
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-32121189IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.71125202IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-38126206IPR004333Transcription factor, SBP-box
PfamPF031101.6E-31128201IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MISFSMMEWN AKAPVQWDWE NLDIFNAKST EIPKKLQSDW EIEGEGGIDT GSFYSSGCGA  60
GSGGSGSDLG HAYSSKSSKS ASIDSSSKIW RGLRANAKGS VFSVIPISSD TTAKRSRLSC  120
QNAHVSRCQV EGCNLDLSTA KDYHRKHRVC ESHTKCPKVI VGGLERRFCQ QCSRFHSLSE  180
FDEKKRSCRR RLSDHNARRR KPQPEGIQSN SARLSSFYGG KQQMSLVLSS VPIVHTRPAV  240
NPSWEGTCSK FTQTKGLVRP GNTGGIDRQL HLPGSELQNG ISTLCHDSSR LLHSKGAIAE  300
VLNQGLGDSM ISSNLDTSQD LRRALSLLST NSWGSCETQP IPSDHPMHVN QTSMPQSIMH  360
AVSQGMLHST SEHWRTELPS TDSRVHILPS QGDGNTHFQE FKLFKAPYES GFSSGQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271282011184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183200KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.213080.0bud| flower| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4770840.0AM477084.1 Vitis vinifera contig VV78X050214.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271312.20.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
TrEMBLF6HGB10.0F6HGB1_VITVI; Uncharacterized protein
STRINGVIT_01s0010g03710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-53squamosa promoter binding protein-like 2