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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010284001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 491aa MW: 53606.1 Da PI: 9.7343 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GSVIVT01010284001 68 FICEVCNKGFQREQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GSVIVT01010284001 144 WKCEKCSKRYAVQSDWKAHSKTC 166 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.31E-7 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.3E-5 | 68 | 90 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 60 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 132 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.31E-7 | 139 | 164 | No hit | No description |
SMART | SM00355 | 130 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MAASSTPAQL FGIREEEQNQ VKQQHSAVPS SSNAPAAAPP KKKRNQPGTP NAEVIALSPK 60 TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKT TKEVRRKVYL CPEPGCVHHD 120 PARALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAQESA RHPTPMSTIG SHLYGSSNMG LGLSQEFHED QQSQHGGLLT 240 NKPFHGLVHL PDLQNNTNNP SSAANLFNLS FFSNSSNTNS MLSNTNNANN STNMPSSGFN 300 IIGDQISSGV PSLFSTSLQN ENAVSHMSAT ALLQKAAQMG STSSNNSASL LRGFAGSSSA 360 NAKSDRPLVG PNFGGVFGEN ESHLQDLMNS LGGGSSSIFG GGSGGLHQNL TANMGGSDRL 420 TRDFLGVGQM VRTISGGFSQ RDLPPPVIQE EITRKKKQLQ VQELWLFHGN AFFLFLWSRT 480 LWMDDDVLTC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 140 | 201 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 140 | 201 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.3465 | 0.0 | flower| fruit| inflorescence| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM486639 | 0.0 | AM486639.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X099428.3, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268279.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Swissprot | Q8GYC1 | 1e-138 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | F6HG27 | 0.0 | F6HG27_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g02100.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-116 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010284001 |
Publications ? help Back to Top | |||
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