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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010283001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 349aa MW: 39079.8 Da PI: 10.1417 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GSVIVT01010283001 145 FICEVCNKGFQREQNLQLHRRGH 167 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 221 | 243 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSVIVT01010283001 221 WKCDKCSKRYAVQSDWKAHSKTC 243 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-6 | 144 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.0E-8 | 144 | 167 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.5E-5 | 145 | 167 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 186 | 216 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 209 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.0E-8 | 216 | 241 | No hit | No description |
SMART | SM00355 | 140 | 221 | 241 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGGYILGVRA YAYGLIVFFS LHLRIVAVPL DTFLLFLYGL YLKVFRVLEW RFASVEEDHK 60 DRANNCSCIK RLLTMAAPSS SAPFFGTREE EQTQMIQQQS STPTSSTAPT AAAPQKRKRN 120 LPGTPNPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLRQKTTKE 180 VRRKVYLCPE PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHS 240 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARNP PSLTNMGGHL YGTSQMTLGL 300 SQVGNANNSP SAAANLFNLG FFPNNSTIRI SLTMGTPVAK EQRCSPVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 217 | 285 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 217 | 285 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.7998 | 0.0 | cell culture| flower| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM455095 | 0.0 | AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273614.1 | 1e-172 | PREDICTED: protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8RWX7 | 1e-121 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-119 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | F6HG26 | 0.0 | F6HG26_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g02090.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-119 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010283001 |
Publications ? help Back to Top | |||
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