PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010243001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 254aa MW: 27653.5 Da PI: 8.5003 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.3e-08 | 108 | 130 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp GSVIVT01010243001 108 VPCIFFQK-GLCLKGDRCAFLHGP 130 79******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.413 | 24 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.0E-12 | 25 | 79 | No hit | No description |
PROSITE profile | PS50103 | 11.751 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.549 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-5 | 107 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVAATKDSTA PSQPSAAPPE EDALKRNTDC VYFLASPLTC KKGSECEYRH SEHARMNPRD 60 CWFWLNGNCL NPKCSFRHPP LDGLLGTQAT TPSGSSIPTS HSSGKQSVPC IFFQKGLCLK 120 GDRCAFLHGP NPTGNKIPQA PAATPGTEPP SLKKVFGGLE KCTQEQRVLQ PNFSKSFEMI 180 TVFRMVVRML MSFIESPLLV LMSLLMMISE ILITIMMKIS LEKCSVIHMA MTPMSTCMGS 240 ILGIIAGLHQ RGC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427456 | 1e-126 | AM427456.2 Vitis vinifera contig VV78X242760.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654714.1 | 1e-120 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
Swissprot | Q9ZUM0 | 3e-60 | C3H17_ARATH; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | F6HG13 | 1e-118 | F6HG13_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g01770.t01 | 1e-119 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2455 | 12 | 20 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010243001 |
Publications ? help Back to Top | |||
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