PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010152001

Common Name

LOC100258132, VIT_01s0010g00930

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 196aa MW: 22353.9 Da PI: 6.5103

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010152001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.1	2.5e-15	81	138	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ +e GSVIVT01010152001 81 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHSLIDKLNHVSECHDRVLQE 138 79********************************************999877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-16	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	79	130	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.9E-13	81	154	No hit	No description
Pfam	PF00170	7.3E-13	81	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.0E-13	81	130	No hit	No description
CDD	cd14702	3.42E-21	82	133	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MLPGEFTGIH YMAPENPTPF PANFGMTYDN TPTLHFGGYL SNLTTSQIPP IHEFTPQSSS 60 LSNNSTSDEA EEHQLSIIDE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VVRLRNENHS 120 LIDKLNHVSE CHDRVLQENV RLKEEASDLR QMLTDLRIGS PYTTLRELEG VSCNTAHLRA 180 ESSNQSITSS IDLLH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM457581	0.0	AM457581.2 Vitis vinifera contig VV78X004271.7, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269495.1	1e-144	PREDICTED: basic leucine zipper 43
Swissprot	Q9FMC2	6e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	D7TAA5	1e-142	D7TAA5_VITVI; Uncharacterized protein
STRING	VIT_01s0010g00930.t01	1e-143	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3104	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	6e-45	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	GSVIVT01010152001
Entrez Gene	100258132

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]