PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009892001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 413aa MW: 46866.8 Da PI: 8.1503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.4e-05 | 30 | 52 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H GSVIVT01009892001 30 ACSECGEVFPKTESLELHQAVrH 52 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.349 | 29 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 52 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.47E-9 | 54 | 167 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 6.2E-5 | 56 | 167 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MQFRKLSGCY ECHMIVDPNR YPSPRTTICA CSECGEVFPK TESLELHQAV RHAVSELGPE 60 DSGRNIVEII FKSSWLKKDN PICKIERILK VHNTQRTIQR FEECRDAVKV RANNNTKKNP 120 RCAADGNELL RFHCTTLTCA LGSRGSSSLC GSVPGCGVCT IIRHGFQGKA EIEVEKYFRE 180 EFEEESCKVR RKDVQGLIEV ENPNWGKLDI FKIRDIYIEK TTQLFRREKN EIDKQKRHEQ 240 GIKLHELHRF LLILSHNLCI LEATMKRKSC SPCDSLESFF DDNELEVSEI LIQIPLIIFQ 300 AENRNRLLVP WGVRKRRSAI DPELYPPSVP SSSSPHLPGT CVGPTCDDDD PQAKVEPSSP 360 ATPLSFSPSE TDGKSKRSKK SVSSKKKKEN LLKMVEDLTH QKESLMTVSL LI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430949 | 0.0 | AM430949.2 Vitis vinifera contig VV78X241438.7, whole genome shotgun sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 4e-90 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009892001 |