PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01009892001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 413aa MW: 46866.8 Da PI: 8.1503

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009892001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	30	52	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H GSVIVT01009892001 30 ACSECGEVFPKTESLELHQAVrH 52 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.349	29	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	52	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.47E-9	54	167	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.2E-5	56	167	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MQFRKLSGCY ECHMIVDPNR YPSPRTTICA CSECGEVFPK TESLELHQAV RHAVSELGPE 60 DSGRNIVEII FKSSWLKKDN PICKIERILK VHNTQRTIQR FEECRDAVKV RANNNTKKNP 120 RCAADGNELL RFHCTTLTCA LGSRGSSSLC GSVPGCGVCT IIRHGFQGKA EIEVEKYFRE 180 EFEEESCKVR RKDVQGLIEV ENPNWGKLDI FKIRDIYIEK TTQLFRREKN EIDKQKRHEQ 240 GIKLHELHRF LLILSHNLCI LEATMKRKSC SPCDSLESFF DDNELEVSEI LIQIPLIIFQ 300 AENRNRLLVP WGVRKRRSAI DPELYPPSVP SSSSPHLPGT CVGPTCDDDD PQAKVEPSSP 360 ATPLSFSPSE TDGKSKRSKK SVSSKKKKEN LLKMVEDLTH QKESLMTVSL LI*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MQFRKLSGCY ECHMIVDPNR YPSPRTTICA CSECGEVFPK TESLELHQAV RHAVSELGPE  60
DSGRNIVEII FKSSWLKKDN PICKIERILK VHNTQRTIQR FEECRDAVKV RANNNTKKNP  120
RCAADGNELL RFHCTTLTCA LGSRGSSSLC GSVPGCGVCT IIRHGFQGKA EIEVEKYFRE  180
EFEEESCKVR RKDVQGLIEV ENPNWGKLDI FKIRDIYIEK TTQLFRREKN EIDKQKRHEQ  240
GIKLHELHRF LLILSHNLCI LEATMKRKSC SPCDSLESFF DDNELEVSEI LIQIPLIIFQ  300
AENRNRLLVP WGVRKRRSAI DPELYPPSVP SSSSPHLPGT CVGPTCDDDD PQAKVEPSSP  360
ATPLSFSPSE TDGKSKRSKK SVSSKKKKEN LLKMVEDLTH QKESLMTVSL LI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM430949	0.0	AM430949.2 Vitis vinifera contig VV78X241438.7, whole genome shotgun sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP661	14	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-90	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	GSVIVT01009892001