PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009845001
Common NameLOC100233070, VIT_18s0001g13730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BBR-BPC
Protein Properties Length: 147aa    MW: 16107.6 Da    PI: 10.4186
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009845001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2747.5e-845146158301
          GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                        k+ +k  kk+k+++e+ +k v  +s    sk+++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP++++
  GSVIVT01009845001   5 KKASKPLKKPKREGEDLNKIVFGKS--LVSKSDWKGQDLGLNQVTFDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPN 94 
                        2233334566666666665555555..67*************************************************************** PP

          GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        +r+aR++grKmS++af+klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+
  GSVIVT01009845001  95 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK 146
                        ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.9E-621146IPR010409GAGA-binding transcriptional activator
PfamPF062172.4E-824146IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSNKKASKP LKKPKREGED LNKIVFGKSL VSKSDWKGQD LGLNQVTFDE STMPAPVCSC  60
TGVLRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHARV GGRKMSGSAF NKLLSRLAAE  120
GHDLSIPVDL KDHWAKHGTN RYITIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412KKASKPLKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.34070.0bud| cell culture| flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5977460.0EU597746.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC6-like gene, complete cds.
GenBankEU5977470.0EU597747.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC6-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268020.11e-100GAGA-binding transcriptional activator BBR/BPC6-like
RefseqXP_010664073.11e-100PREDICTED: GAGA-binding transcriptional activator BBR/BPC6-like isoform X1
SwissprotQ8L9994e-79BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLB2Z4583e-99B2Z458_VITVI; GAGA-binding transcriptional activator BBR/BPC6-like
STRINGVIT_18s0001g13730.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.37e-79basic pentacysteine 6
Publications ? help Back to Top
  1. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]