PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009844001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BBR-BPC
Protein Properties Length: 110aa    MW: 12366.8 Da    PI: 6.5193
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind83.29.4e-261101194
          GAGA_bind   1 mdddgsre..rnkg.yye...paaslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                        md+ g+re  r+k+  y+   + + l +++   +q+m+++aerd++++ernlalsekkaavaerdmaflqrd+a+aern+a++erdn++++l
  GSVIVT01009844001   1 MDEGGHREngRHKAdPYKavhS-QWLMQHQptMKQIMAIMAERDTAVQERNLALSEKKAAVAERDMAFLQRDTAIAERNNAIMERDNAIATL 91 
                        9999*99999999987886651.33333331146********************************************************** PP

          GAGA_bind  85 llvenslasa 94 
                        +++ensl+ +
  GSVIVT01009844001  92 QYRENSLNAT 101
                        *****98843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-51109IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-16198IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDEGGHRENG RHKADPYKAV HSQWLMQHQP TMKQIMAIMA ERDTAVQERN LALSEKKAAV  60
AERDMAFLQR DTAIAERNNA IMERDNAIAT LQYRENSLNA TLTSSNPSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.34071e-156bud| cell culture| flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5977471e-166EU597747.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC6-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268020.13e-67GAGA-binding transcriptional activator BBR/BPC6-like
RefseqXP_010664073.13e-67PREDICTED: GAGA-binding transcriptional activator BBR/BPC6-like isoform X1
SwissprotQ8L9991e-51BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A438K1N79e-66A0A438K1N7_VITVI; Protein basic pentacysteine 6
TrEMBLB2Z4588e-66B2Z458_VITVI; GAGA-binding transcriptional activator BBR/BPC6-like
STRINGVIT_18s0001g13730.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.15e-54basic pentacysteine 6