PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009841001
Common NameLOC100262483, VIT_18s0001g13710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BBR-BPC
Protein Properties Length: 108aa    MW: 12299 Da    PI: 8.5206
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009841001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind58.62.9e-1822981894
          GAGA_bind 18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasa 94
                         ++ +   qlm+++aerda+i+ernlalsekka++a+rd a l+rd+a+ er++al+erdn + +l ++ ns++s 
  GSVIVT01009841001 22 WLMQPQTMEQLMAILAERDAAIQERNLALSEKKAVLAQRDLAILERDAAIVERDNALLERDNVISTLRYRGNSMNSC 98
                       456777788*************************************************************9998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.7E-91991IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGGDREIRRE KVHPHGTTQN QWLMQPQTME QLMAILAERD AAIQERNLAL SEKKAVLAQR  60
DLAILERDAA IVERDNALLE RDNVISTLRY RGNSMNSCNW GKRKENA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.185960.0bud| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3867281e-169FQ386728.1 Vitis vinifera clone SS0AEB28YO17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634376.11e-73PREDICTED: protein BASIC PENTACYSTEINE6 isoform X5
RefseqXP_010664776.11e-73PREDICTED: protein BASIC PENTACYSTEINE6 isoform X5
RefseqXP_010664777.11e-73PREDICTED: protein BASIC PENTACYSTEINE6 isoform X5
SwissprotQ8L9998e-30BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLE0CPJ53e-72E0CPJ5_VITVI; Uncharacterized protein
STRINGVIT_18s0001g13710.t015e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-32basic pentacysteine 6