PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

TALE

Protein Properties

Length: 529aa MW: 58577.8 Da PI: 7.0499

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009781001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	343	380	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + GSVIVT01009781001 343 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 380 664459******************************88 PP
2	BELL	105.3	4.1e-34	206	277	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+l+ kkakLls+l+eVdkrYkqy++q q+v s F++ ag g+ak Y +lAl++iS hFrcL+dai++qi GSVIVT01009781001 206 ERQDLEHKKAKLLSMLDEVDKRYKQYYDQTQIVGSFFDMLAGFGAAKTYMALALQRISCHFRCLRDAISGQI 277 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.7E-51	146	275	IPR006563	POX domain
Pfam	PF07526	2.3E-41	152	274	IPR006563	POX domain
PROSITE profile	PS50071	12.26	321	384	IPR001356	Homeobox domain
CDD	cd00086	1.19E-12	324	385	No hit	No description
SMART	SM00389	2.2E-9	324	388	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.59E-17	325	390	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-27	327	389	IPR009057	Homeodomain-like
Pfam	PF05920	1.7E-17	341	380	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MQSVGLQLKN ATGAPTGNFV TGNPQIVPRT QLGILDAEQN FLPQRLSLSL STQIPSTVPL 60 ASFQYQYVNP GLSSRFGSYV SSSAERTISC EGDESSQAKE FRNDEYLPSS FPGTDQSSVK 120 TEALCNPRYS EIPKVTGADQ CLYESFGPAN TVLNSKFLKS VQQLLDEVVN VRKTLKQQEF 180 DKHHKFHGID PNGLVTNSSC KLSSTERQDL EHKKAKLLSM LDEVDKRYKQ YYDQTQIVGS 240 FFDMLAGFGA AKTYMALALQ RISCHFRCLR DAISGQIRIT CRNLGEQDTS PNGLGGGMSR 300 LGYVDQQLRQ QRALQQFGGM RHAWRPQRGL PESSVSILRT WLFEHFLHPY PKDSEKIMLA 360 RQTGLTRSQV ANWFINARVR LWKPMVEEIY KEEIGDSETK SKSSPESPPK EPRDDSWASE 420 DKGEELQETM TSTAAAGGHL GQSHNMTLMA ATYHISELSD LGVGSQVSLA LGLRHCESDV 480 PSISGGPLIR GGDIAASVGP DTAEYNCMDS GNQRHRFGKP HLIHDFVV*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MQSVGLQLKN ATGAPTGNFV TGNPQIVPRT QLGILDAEQN FLPQRLSLSL STQIPSTVPL  60
ASFQYQYVNP GLSSRFGSYV SSSAERTISC EGDESSQAKE FRNDEYLPSS FPGTDQSSVK  120
TEALCNPRYS EIPKVTGADQ CLYESFGPAN TVLNSKFLKS VQQLLDEVVN VRKTLKQQEF  180
DKHHKFHGID PNGLVTNSSC KLSSTERQDL EHKKAKLLSM LDEVDKRYKQ YYDQTQIVGS  240
FFDMLAGFGA AKTYMALALQ RISCHFRCLR DAISGQIRIT CRNLGEQDTS PNGLGGGMSR  300
LGYVDQQLRQ QRALQQFGGM RHAWRPQRGL PESSVSILRT WLFEHFLHPY PKDSEKIMLA  360
RQTGLTRSQV ANWFINARVR LWKPMVEEIY KEEIGDSETK SKSSPESPPK EPRDDSWASE  420
DKGEELQETM TSTAAAGGHL GQSHNMTLMA ATYHISELSD LGVGSQVSLA LGLRHCESDV  480
PSISGGPLIR GGDIAASVGP DTAEYNCMDS GNQRHRFGKP HLIHDFVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	5e-16	330	388	5	63	Homeobox protein Meis2
4xrm_B	5e-16	330	388	5	63	Homeobox protein Meis2
4xrs_A	5e-16	330	387	1	58	Homeobox protein Meis1
4xrs_B	5e-16	330	387	1	58	Homeobox protein Meis1
5bng_A	6e-16	330	388	1	59	Homeobox protein Meis2
5bng_B	6e-16	330	388	1	59	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM460734	0.0	AM460734.2 Vitis vinifera contig VV78X168812.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281021.3	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	O65685	1e-113	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A5BIM7	0.0	A5BIM7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g13150.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-106	BEL1-like homeodomain 6

Link Out ? help Back to Top
Phytozome	GSVIVT01009781001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]