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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009651001 | ||||||||
Common Name | LOC100252228, VIT_18s0001g11980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 38637 Da PI: 5.4619 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38 | 5.2e-12 | 38 | 89 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g+Wk +g+ e++s +++ +g ++t+ fy+g++p+ ktdWv+++y++ GSVIVT01009651001 38 TK-FAEGFWKPKGEPYEIFS-NSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKI 89 22.458**************.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.524 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-20 | 2 | 111 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-5 | 22 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MINGSPLPDN VMIEVNPYQH NPSCLSDRFW YLTSSEDTKF AEGFWKPKGE PYEIFSNSSI 60 TGWRTTFEFY EGTTPHVLKT DWVLQQYKIT QKGQSKNIKP MASSSLCRVF QSRGQSSSHE 120 MQKELGVANV ADENHTCSKP SVVSNTDNST GQGSKSESQV QHGNGETGLL AAPERSLNHP 180 VDNLPEIDYF SDGDFLELGD LADPVSPSSS SDNSSCLSQT SDECFDSLAL LRDLECDKDV 240 GCKFSVAALV MPDKVVLQPA SSGSLTCDDR RKLPAEGPPK TDSSLLGSTK LSEKKGLKRA 300 IATQEADNKV EGPSSNPHNL VASSGSNKAA SSDEKGKAAA DRKKKLKKYL CFMPF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.6973 | 0.0 | bud| cell culture| flower| fruit| leaf| pedicel |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM473540 | 1e-174 | AM473540.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X110378.12, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664657.1 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X2 | ||||
TrEMBL | E0CQ01 | 0.0 | E0CQ01_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g11980.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP12164 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 2e-14 | NAC domain containing protein 57 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009651001 |
Entrez Gene | 100252228 |