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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01009274001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
HD-ZIP |
Protein Properties |
Length: 299aa MW: 33797.4 Da PI: 8.9526 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01009274001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq +Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k
GSVIVT01009274001 126 RKKLRLTKEQAVILEDSFKQHSTLNPRQKQVLAKQLNLRPRQVEVWFQNRRARTK 180
78889************************************************98 PP
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2 | HD-ZIP_I/II | 119 | 2.5e-38 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq+ +LE+sF+++++L+p++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e L++++++l++en+rL+ke +eL+ +l
GSVIVT01009274001 126 RKKLRLTKEQAVILEDSFKQHSTLNPRQKQVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLRKRCETLTDENQRLQKELQELK-AL 215
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGFEDVCCTG LGLGLGRQDR PQSRLQSDHQ EKKKKLCLKY DNSFPCLTLG PSEDTYQLAA 60 KINDAGKGYG ESTDLHRQAS SLSAVSSFSN SSIKKERDLC GEVEVEVEIE RVSSRASDED 120 EEGNSRKKLR LTKEQAVILE DSFKQHSTLN PRQKQVLAKQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEL LRKRCETLTD ENQRLQKELQ ELKALKLATP LYMQLPAATL TMCPSCERIG 240 SGGDASSKTS FTIGAKPRFS ITDFYSSGNL SFHLFVWIRG KSMRNINLDE LVVRRPHH*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 124 | 130 | SRKKLRL |
2 | 174 | 182 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM471256 | 0.0 | AM471256.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X050940.4, clone ENTAV 115. |