PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01009197001 | ||||||||
Common Name | LOC100242037, VIT_18s0001g07720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 249aa MW: 27481.4 Da PI: 7.467 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.2 | 4e-17 | 159 | 195 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp g+++LCnaCGl+++ +g+ GSVIVT01009197001 159 CTHCGTSSksTPMMRRGPTGPRSLCNACGLFWANRGS 195 *********************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.4E-11 | 24 | 59 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.587 | 24 | 59 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.4E-12 | 26 | 58 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.6E-16 | 91 | 133 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.6 | 91 | 133 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.686 | 153 | 213 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.9E-14 | 153 | 206 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.99E-12 | 155 | 204 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.5E-16 | 158 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.34E-16 | 159 | 205 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 159 | 186 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.6E-15 | 159 | 195 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MEVAGDVPSD AVYVADGSEV ALQPSDATNQ LTLSFRGQVY VFDSVTHEKV RSVLLLLGTP 60 ELSSIAHNME IVPQNQRALT DFPGPYNQPH RAASLNRFRQ KRKERCFDKK IRYNVRQEVA 120 LRMQRNKGQF SSSKKSEGTF SWDSVQDSGQ DESPPETLCT HCGTSSKSTP MMRRGPTGPR 180 SLCNACGLFW ANRGSLRDLS KKNQDHSLNQ IERGDGEAND SDCGTSGYIN NNHVAFSNSD 240 NPALIPEQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.1240 | 0.0 | cell culture| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM471833 | 5e-75 | AM471833.2 Vitis vinifera contig VV78X137776.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283753.1 | 0.0 | PREDICTED: GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 9e-78 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | F6H146 | 0.0 | F6H146_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g07720.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24470.2 | 4e-80 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01009197001 |
Entrez Gene | 100242037 |
Publications ? help Back to Top | |||
---|---|---|---|
|