PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009184001
Common NameLOC100245507, VIT_18s0001g07620
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 642aa    MW: 67211.8 Da    PI: 5.5701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009184001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08196240144
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                        r++W+ +Ed+ l+ av++ G g+W+ I +      R++ q+  rw
  GSVIVT01009184001 196 RKPWSSDEDKELIAAVQKCGEGNWANILKGDFkGDRSASQLSQRW 240
                        789************************873212466666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-14191248IPR009057Homeodomain-like
PROSITE profilePS5129413.708191248IPR017930Myb domain
SuperFamilySSF466895.89E-12193245IPR009057Homeodomain-like
SMARTSM007174.9E-9195246IPR001005SANT/Myb domain
PfamPF002493.5E-7196240IPR001005SANT/Myb domain
CDDcd116602.32E-13197245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MVEMPKMRKK GTISEEDVSA LLQRYTPTAV LALLQEVAQL PDVKIDWNAL VNKTSTGISN  60
AREYQMLWRH LAYGHALLEK LEDGAQPLDD DSDLEYDLEA FPSISTEASA EATACVKVLI  120
ASSLPSDSSL PNSSMVEAPL TINIPCGQSS RAPSEYSRLS GSMQGTNITI PVSVQKSEGF  180
DANGSTSGSL PARKKRKPWS SDEDKELIAA VQKCGEGNWA NILKGDFKGD RSASQLSQRW  240
TIIRKKHKNL NVGGANSNGS QLSEAQLAAR HAMSLALDMP VKNLTTSSSI AGTNPNATSS  300
NSAFPATPAE ALPASTNISQ AQQLSQQGPV STLSQMGSLG SAPKSRATSK KTSAKSTFSS  360
QSMLKATAVA AGARIATPSA AASLLKDAQS RNAVHIMPGG STLIKSSVAG GANPLPANHL  420
GAHPNVHYKC AGPPTTSLST YSAVAPSVSR TGSAKPAAPG GQLAPSPSAT SVNISSEQTN  480
AATTSLAVEY PAKQETKTSE ETKVPISGNV PKAKVLEDQA CVSSNTASEQ VQEDQATLSN  540
TEVVLENKKA MVSDTKCLLK TETAENDGEV AESQNVNDNK IMDFRVAGEC ENQSVANENS  600
GNQNANEKQT DLPNTATDCG EKSDEVDVFA NGVSYSLFFS C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4270820.0AM427082.2 Vitis vinifera contig VV78X040019.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664416.10.0PREDICTED: uncharacterized protein LOC100245507 isoform X1
TrEMBLF6H1400.0F6H140_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07620.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.22e-67MYB_related family protein