PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ZF-HD

Protein Properties

Length: 247aa MW: 27609.3 Da PI: 9.4015

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009128001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.2	3.4e-32	102	157	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + rY+eClkNhA+ +GghavDGCgEfmp+ g+egt ++l+CaAC+CHRnFHR+e+e GSVIVT01009128001 102 NSRYRECLKNHAVGIGGHAVDGCGEFMPA-GDEGTLDGLRCAACNCHRNFHRKESEG 157 579***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-24	91	156	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.1E-29	103	155	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-29	104	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.418	105	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.79E-19	178	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-32	178	245	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-24	183	239	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MASMLAANGA KTPAITGKPK AKKWGWVEGK RGHNLSFRNG KHMKTFQVEK VETEMEFEEH 60 EEQEEDMGMA VQASYESVGN TGRPKMGSGG GEGASTVRKV GNSRYRECLK NHAVGIGGHA 120 VDGCGEFMPA GDEGTLDGLR CAACNCHRNF HRKESEGDTL YHQFSPYYRT PAGYLHVAPS 180 HLKKRFRTKF TQEQKDKMLA FAETLGWRIQ KHDEAAVQQF CQETCVKRHV LKVWMHNNKH 240 TLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-27	184	241	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.29627	0.0	inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476712	0.0	AM476712.2 Vitis vinifera contig VV78X131483.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285709.1	1e-127	PREDICTED: zinc-finger homeodomain protein 1
Swissprot	Q9SB61	4e-66	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A438FZF5	1e-164	A0A438FZF5_VITVI; Zinc-finger homeodomain protein 1
TrEMBL	A5BZD7	1e-164	A5BZD7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g07140.t01	1e-126	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-67	homeobox protein 22

Link Out ? help Back to Top
Phytozome	GSVIVT01009128001

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]