 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSVIVT01009046001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
Family |
C2H2 |
Protein Properties |
Length: 324aa MW: 36064.2 Da PI: 9.0039 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01009046001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 21.6 | 5.7e-07 | 116 | 135 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C++C+k+F+r nL+ H+
GSVIVT01009046001 116 FSCHICNKTFNRYNNLQMHM 135
89*****************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MEPSDIPFSS NPSACSSSHD NIYNELLNLF PDTRPNSLEP LPLPSSLLCS PKAVPLEGNT 60 KASNEDTGDV TVTLCIGLPD NKDGSKNAVD KRDSDIAATQ YWIPTPAQIL IGFTHFSCHI 120 CNKTFNRYNN LQMHMWGHGS QYRKGPESLK GTQPRAVLSI PCYCCTQGCK NNIDHPRAKP 180 LKDFRTLQTH YKRKHGMKPF MCRKCGKCLA VKGDWRTHEK NCGKRWLCAC GSDFKHKRSL 240 KDHIKAFGSG HGPFPPPFEG VQLREDAVPF PFLINKQRSL VPSMNSLGNV AEFPNTISGR 300 RTHYLQAPMQ TLSAVDLSTM QSF*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}. |
Uniprot | TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM432487 | 0.0 | AM432487.2 Vitis vinifera contig VV78X114964.15, whole genome shotgun sequence. |