PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 325aa MW: 36103.7 Da PI: 6.8713

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009032001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.8	6.9e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +v+++G g+W++ ++ g++R++k+c++rw +yl GSVIVT01009032001 14 KGPWTPEEDQKLVSYVQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.5	1.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l GSVIVT01009032001 67 RGKFSQEEEQTILHLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-27	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.252	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-33	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.45E-13	16	61	No hit	No description
PROSITE profile	PS51294	27.01	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.91E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVSYVQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DDLFSSLTHL LALANLRNLM EHHSLDDHSL KIQADAIQLA KLQYLEYLLQ 180 STVSASTNSY SPNGIANMEA FSFSSSSIPP MKENPVLSSL QLENLASFSL DSDTSQPLHH 240 PSPLAHLTAP QVPFQTPLNS EMGQTSNPNS PWVLPSPSTT LPPLVTNLSM NHPGEGSSIS 300 SYGGGPSPYW SELFEDHLMH DDLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-30	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444997	0.0	AM444997.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X157080.2, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284142.1	0.0	PREDICTED: transcription factor MYB39
Swissprot	Q9S9Z2	1e-112	MYB93_ARATH; Transcription factor MYB93
TrEMBL	E0CRK7	0.0	E0CRK7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g05670.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-107	myb domain protein 93

Link Out ? help Back to Top
Phytozome	GSVIVT01009032001
Entrez Gene	100243754

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]