 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSVIVT01009032001 |
Common Name | LOC100243754, VIT_18s0001g05670 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
Family |
MYB |
Protein Properties |
Length: 325aa MW: 36103.7 Da PI: 6.8713 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01009032001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 62.8 | 6.9e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv +v+++G g+W++ ++ g++R++k+c++rw +yl
GSVIVT01009032001 14 KGPWTPEEDQKLVSYVQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
|
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l
GSVIVT01009032001 67 RGKFSQEEEQTILHLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
89********************.*********.************996 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MGRSPCCDEN GLKKGPWTPE EDQKLVSYVQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DDLFSSLTHL LALANLRNLM EHHSLDDHSL KIQADAIQLA KLQYLEYLLQ 180 STVSASTNSY SPNGIANMEA FSFSSSSIPP MKENPVLSSL QLENLASFSL DSDTSQPLHH 240 PSPLAHLTAP QVPFQTPLNS EMGQTSNPNS PWVLPSPSTT LPPLVTNLSM NHPGEGSSIS 300 SYGGGPSPYW SELFEDHLMH DDLS*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM444997 | 0.0 | AM444997.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X157080.2, clone ENTAV 115. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |