PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 11538.4 Da PI: 9.901

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01008980001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.6	9.3e-25	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+k rqv+fs+R++g++KKA+ELSvLCd+++a+i+f ++g+l +s GSVIVT01008980001 10 RIEDKATRQVSFSRRKKGLIKKAYELSVLCDIDIALIMFPPSGRLTQFS 58 8*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.46	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-29	2	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009010	anatomy	seed
PO:0025501	developmental stage	fruit formation stage
PO:0025502	developmental stage	fruit ripening stage

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MGRGKQEMRR IEDKATRQVS FSRRKKGLIK KAYELSVLCD IDIALIMFPP SGRLTQFSGK 60 KRMEEVFTRY MHLTDEEREE YALELLVQFA FERVWSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
1tqe_R	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
1tqe_S	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6byy_A	3e-18	1	70	1	69	MEF2 CHIMERA
6byy_B	3e-18	1	70	1	69	MEF2 CHIMERA
6byy_C	3e-18	1	70	1	69	MEF2 CHIMERA
6byy_D	3e-18	1	70	1	69	MEF2 CHIMERA
6bz1_A	3e-18	1	70	1	69	MEF2 CHIMERA
6bz1_B	3e-18	1	70	1	69	MEF2 CHIMERA
6bz1_C	3e-18	1	70	1	69	MEF2 CHIMERA
6bz1_D	3e-18	1	70	1	69	MEF2 CHIMERA
6c9l_A	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6c9l_B	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6c9l_C	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6c9l_D	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6c9l_E	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
6c9l_F	3e-18	1	86	1	85	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM486084	7e-97	AM486084.2 Vitis vinifera contig VV78X084760.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071852.1	4e-59	PREDICTED: agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	1e-30	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	E0CRG3	1e-64	E0CRG3_VITVI; Uncharacterized protein
STRING	VIT_18s0001g04810.t01	2e-65	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	2e-33	AGAMOUS-like 67

Link Out ? help Back to Top
Phytozome	GSVIVT01008980001

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]