PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008960001
Common NameVIT_18s0001g04470
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 362aa    MW: 41021.1 Da    PI: 7.1296
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008960001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-1175117345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         +k +rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  GSVIVT01008960001  75 TDKTQRRLAQNREAARKSRLRKKAYVQQLETSRLKLTELEQEL 117
                        5899**************************9777777666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-967120No hitNo description
SMARTSM003382.0E-673136IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.33575119IPR004827Basic-leucine zipper domain
PfamPF001705.2E-875117IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-877119No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141442.4E-31165238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSSSTQFAT SRRIGMHEPL HQISMWRDTF KGDSNPITGA STIMQVDTML DNKSESTSHD  60
SLGPSGNSQP EDRTTDKTQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL TELEQELERA  120
RQQGLYIGGS LDTTRVGFSG TINSGIATFE MEYGHWVEEQ HRQNCELRNA LQAHVTDIEL  180
RILVESALNH YYELFRMKAD AAKADVFYLM SGMWRTSAER FFLWIGGFRP SELLNVLMPH  240
FEPLTDQQLL DVCNLRQSSQ QAEDALSQGM DKLQQTLAQS IVTDPVGAGN YRSQMAEAVE  300
KLDALESFVN QADHLRQQTL RQMSHLLTTR QAARGLLALG EYFHRLRALS SLWAARPREP  360
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.236960.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3946420.0FQ394642.1 Vitis vinifera clone SS0AFA1YJ19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285820.10.0PREDICTED: transcription factor TGA4
RefseqXP_010664271.10.0PREDICTED: transcription factor TGA4
RefseqXP_010664272.10.0PREDICTED: transcription factor TGA4
RefseqXP_010664273.10.0PREDICTED: transcription factor TGA4
RefseqXP_019072140.10.0PREDICTED: transcription factor TGA4
SwissprotQ391621e-175TGA4_ARATH; Transcription factor TGA4
TrEMBLF6H0P00.0F6H0P0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g04470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-166TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]