PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008925001
Common NameLOC100257501, VIT_18s0001g03670
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 304aa    MW: 32692.7 Da    PI: 8.4882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008925001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056991223
                       EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                       +CpdCg+ F   +nL+ H+ + H
  GSVIVT01008925001 69 SCPDCGEIFMKAENLELHQAVrH 91
                       8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-46787IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.9126896IPR007087Zinc finger, C2H2
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SuperFamilySSF563993.74E-2693302No hitNo description
Gene3DG3DSA:3.90.228.101.7E-1594301IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKAPLSELNG VVSSTSSSLS ISASSNSSVG GSFRGMPFRR LSGCYECRMV VDPVLGITRD  60
PSLRTTICSC PDCGEIFMKA ENLELHQAVR HAVSELGPED TSKNIVEIIF QSSWLKKQAP  120
VCKIDRILKV HNTPKTISKF EEYRDSIKTK ATKLQKKHPR CVADGNELLR FHCTTFVCSI  180
GLNGSSNLCN SIPSCSICSI IKNGFKVAGG VPGKGILTTA TSGKAHDSSR MSLPDDNEKR  240
AMLVCRVIAG RVKKSATQLE GGVCTEEFDS VAGVGGVYSN LDELYVSNPK AILPCFVVIY  300
TES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.143270.0flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4589100.0AM458910.2 Vitis vinifera contig VV78X155601.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284394.30.0PREDICTED: uncharacterized protein LOC100257501
TrEMBLF6H0L70.0F6H0L7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g03670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-93C2H2-like zinc finger protein