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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01008806001 |
Common Name | VIT_18s0001g01760 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
MIKC_MADS |
Protein Properties |
Length: 185aa MW: 21559.7 Da PI: 7.8065 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01008806001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 43.9 | 3.1e-14 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
+KKA+E+ vLCda v+++if+s+gk++ey+s
GSVIVT01008806001 1 MKKAKEITVLCDAHVSLVIFASSGKMHEYCS 31
8****************************96 PP
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2 | K-box | 78.1 | 2.2e-26 | 43 | 139 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
y+k+sgk+l++ak+e+l++el+++kke++++q e+Rhl+Ged++sL +keL+ +e++Le +l ++R+k++e++++ ++++ e+e+++ n
GSVIVT01008806001 43 YHKQSGKRLWDAKHENLNNELDRIKKENDSMQIELRHLKGEDISSLHHKELMAIEDALEIGLASVRNKQMEFYKMVKKNQRILEEENKHLNY 134
8999**********************************************************************************999998 PP
K-box 93 aLrkk 97
+++
GSVIVT01008806001 135 IVHHQ 139
77765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MKKAKEITVL CDAHVSLVIF ASSGKMHEYC SPSTTLIDIL DRYHKQSGKR LWDAKHENLN 60 NELDRIKKEN DSMQIELRHL KGEDISSLHH KELMAIEDAL EIGLASVRNK QMEFYKMVKK 120 NQRILEEENK HLNYIVHHQG MPMEAGNVRE VESGYHQRAV RDYNPQMPFA FRVQPIQPNL 180 QERI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ059750 | 0.0 | DQ059750.1 Vitis vinifera putative PISTILLATA-like MADS-box protein (MADS9) mRNA, complete cds. |