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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01008644001 |
Common Name | VIT_17s0000g00270 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 340aa MW: 38196.4 Da PI: 6.2871 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01008644001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 82.4 | 5.9e-26 | 37 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
rWt+qe+ +Li++++ e+r+rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl +++kkik++e++ +++++s +++ +
GSVIVT01008644001 37 RWTRQETFVLIQGKKIAENRVRRGRrsssafgsdQVEPKWDSVSSYCRRHGVNRGPVQCRKRWSNLVGDFKKIKTWESEVREDAESFWVLRN 128
8*********************986666777777**********************************************999999999999 PP
trihelix 84 qle 86
+l+
GSVIVT01008644001 129 DLR 131
886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0050777 | Biological Process | negative regulation of immune response |
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MAPEHSDVHE NAVGVGVGVS NGIDGGDDKN KVARHPRWTR QETFVLIQGK KIAENRVRRG 60 RRSSSAFGSD QVEPKWDSVS SYCRRHGVNR GPVQCRKRWS NLVGDFKKIK TWESEVREDA 120 ESFWVLRNDL RRERKLPGFF DREVYDVLDG RAFSATAFPL ALVSAMPDGE EEEEEEEAVF 180 DSGRQAAAED GLFSDSEQLG QEEASGSLEK ETTAATESPT QTTPIPLPIS ERKFQKFYQG 240 CTSQGKQKGK QHCSDAWTGP MSEERWKRRR VSVDGCAETN MEEQLIKVLE RNSKRLNAQL 300 EAQNVNSQLD RDQRKDHANS LVAALSKLTD AIVRIADKL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM458473 | 0.0 | AM458473.1 Vitis vinifera contig VV78X094999.4, whole genome shotgun sequence. |