PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008628001
Common NameLOC100268131, VIT_17s0000g00430
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 350aa    MW: 38748.6 Da    PI: 6.874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008628001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09181228455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01008628001 181 SHSLAERVRREKISERMKLLQALVPGC----DKVTGKALMLDEIINYVQSLQ 228
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.11E-10175232No hitNo description
SuperFamilySSF474591.2E-16175244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16177242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAFSYQHPP FLLDSVFLPS TPIKMSGFME EGNTTTCFSQ FFPSESLHEV PADARVHEST  60
SLQHSSKVTL SDNEPCVTQK LSTDSSSVVD RLELGEQVTQ KVAPIERERK RKSRDGSSLT  120
SAQSKDAREG KGKKAKKGSG LVKDGEEEQL KADKKDQKKA SEEPPTGYIH VRARRGQATD  180
SHSLAERVRR EKISERMKLL QALVPGCDKV TGKALMLDEI INYVQSLQNQ VEFLSMKLAS  240
VNPMFYDFGM DLDALMVRPE RLSALTSPLP SLQQCSPSQP TAYADTTTTF TATNNYPVMD  300
TSASILFHQG QRLNVFSQDN GSLLWDVDDQ RQKFINPSGL ISNNLCSFN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5870.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918260.0FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284464.10.0PREDICTED: transcription factor bHLH137
TrEMBLD7SH590.0D7SH59_VITVI; Uncharacterized protein
STRINGVIT_17s0000g00430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-55bHLH family protein