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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008570001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NF-YC | ||||||||
Protein Properties | Length: 216aa MW: 23729.1 Da PI: 4.7148 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40.8 | 4.8e-13 | 1 | 35 | 4 | 35 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkaded 35 +fw++q ie+++dfknh+lPlarikki+kaded GSVIVT01008570001 1 MFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADED 35 5898887789************************9 PP | |||||||
2 | NF-YC | 39 | 1.7e-12 | 35 | 67 | 70 | 102 |
NF-YC 70 krrtlkksdiaaavtrtdifdflvdivprdelk 102 +rrtl+k+diaaa+trtdifdflvdivprde+k GSVIVT01008570001 35 DRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 67 69****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.56E-12 | 7 | 57 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.7E-8 | 12 | 35 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.1E-8 | 36 | 63 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MFWSYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDRRTLQ KNDIAAAITR TDIFDFLVDI 60 VPRDEIKDEG GLGMVGSTAS GVPYYYPPMG QPAPGVMMGR PAVPGVDPGV YVQPPSQAWQ 120 SVWQTAEDGS YGSGGSSGQG NLDGQGVGFL PPPPIIVYLF GEEGFDLRPG DEKGVEVRQP 180 VMLFSSLCCT RIASTCKNID ILSKRPLWML WCFPA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.12631 | 0.0 | bud| flower| fruit| inflorescence| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ392138 | 0.0 | FQ392138.1 Vitis vinifera clone SS0AFA7YF12. | |||
GenBank | FQ395872 | 0.0 | FQ395872.1 Vitis vinifera clone SS0AFA13YG24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284041.1 | 3e-85 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Refseq | XP_010663766.1 | 3e-85 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2 | ||||
Swissprot | Q9SMP0 | 6e-63 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A5AFH0 | 8e-84 | A5AFH0_VITVI; Uncharacterized protein | ||||
TrEMBL | F6GSW8 | 1e-83 | F6GSW8_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g01130.t01 | 2e-84 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-63 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008570001 |
Publications ? help Back to Top | |||
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