PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008556001
Common NameLOC100261045, VITISV_022138
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 378aa    MW: 41170.9 Da    PI: 7.5677
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008556001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.7e-4193169278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC++dls+++eyhrrhkvCe hsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  GSVIVT01008556001  93 CLVDGCNSDLSNCREYHRRHKVCELHSKTAQVTIGGHTQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-3385154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.64190167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3891172IPR004333Transcription factor, SBP-box
PfamPF031103.2E-3093166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDWNLKTPSW DLTELETEAI PNIDVVGGTS SSGVHKTGGD FSIDLKLGQV SNPSSDFADK  60
LKEQKFSSIA APLPSGSSKR ARATNNGSQT VSCLVDGCNS DLSNCREYHR RHKVCELHSK  120
TAQVTIGGHT QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE PLSRPGSFLT  180
NYQGSGLLPF SSPHLYPTTA MMSPNWGAGL VKTEEGAILY NQHQQLPLLE KQHLHLGSSS  240
SFYKGGKQLT FLQADHPSLS NYTTSEAPVC QPLAGHGCKM FYDRLTNQVL ESDCALSLLS  300
SPQTQSSGIS LSNMVQPNSV SLAQPSAPSL HYNNQPVDSV LVSNAGVTDI HCPGIFHIGS  360
DGSSGNEAPQ KLPFFWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28931661184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149166KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.175740.0fruit| inflorescence| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4645320.0AM464532.2 Vitis vinifera contig VV78X243089.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280160.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010663753.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA5BME30.0A5BME3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-80SBP family protein