PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008164001
Common NameVIT_17s0000g04790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 566aa    MW: 61847.6 Da    PI: 8.0563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008164001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14258309255
                        HHHHHHHHHHHHHHHHHH..HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsa..feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++  f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  GSVIVT01008164001 258 RSKHSATEQRRRSKINDRrvFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 309
                        889**************9889*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-22256331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15258335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-12258309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-14258313No hitNo description
PROSITE profilePS5088811.426258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9262314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLCSHSTVQ QDPRPSQAGY LKTHDFLQPL ERGEKNSIKE  60
ENAIEIRTVD KPPPPAPPPN SSVEHILPGG IGTYSISHIS YFNQRLPKPE GSIFTAAQAS  120
TSDRNEENSN CSSYTGSGFT LWEETAVKKG KAGKENAVER SIGIEPAVKL GQWTSERPSQ  180
SPSNHRSSFS SLSSSQSSGQ KNQSFMEMIQ SASAKGTQEE EEEDEEEFVL KKESSSNKGD  240
LTVKVDGKSS DQKAVTPRSK HSATEQRRRS KINDRRVFQM LRDLIPHSDQ KRDKASFLLE  300
VIEYIQFLQE KVHKYEGSFQ GWNHESAKLM PWRNSHRPAE SFADQSRGIN SGSGPALMFS  360
AKFDENNVAV SPNISRNTQN PVESDLSAST TFKAMDRHPG LTNKAVPIHM QLQPNIFTPV  420
VGGGGLAQLP PRLAPDAENM ASLPQSQLWQ SRSSVTTECT VASDKLKEQE LTIEGGTISI  480
SSAYSQGLLN TLTQALQSSG VDLSKASISV QIDLGNKANS RPTAPTPIIK DNQVPSSNHA  540
TARSRVASSG GDSDQALKRH KTCKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5050.0cell culture| flower| fruit| inflorescence| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4301720.0AM430172.2 Vitis vinifera contig VV78X067582.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082147.10.0PREDICTED: transcription factor BIM1
SwissprotQ9LEZ31e-119BIM1_ARATH; Transcription factor BIM1
TrEMBLD7SIP80.0D7SIP8_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-116bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]