PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008156001 | ||||||||
Common Name | VIT_17s0000g04850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Dof | ||||||||
Protein Properties | Length: 256aa MW: 27908.2 Da PI: 9.1287 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.7e-39 | 25 | 85 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ GSVIVT01008156001 25 QNQALKCPRCESLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSK 85 57899****************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 25 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-33 | 27 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.488 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MQDIHSMGAG GGRIFGGDRR LRPHQNQALK CPRCESLNTK FCYYNNYNLS QPRHFCKSCR 60 RYWTKGGVLR NVPVGGGCRK TKRSKAKSSS DAPRERKSNS HSSSESSSLT ATTTAAATTA 120 TTEAVSAPSS NAASTLMTGS NDPAALGFNI SDISPFKYQE QEITAGFLDQ TVQVELSALQ 180 NRSNHGGFPS LDWQTSGDQG IFDLPGNVDQ GYWTQSQCVL FSPLLGFSFF LSNVFPIKLI 240 KYRKNIECFV CLDAS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15178 | 0.0 | bud| fruit| inflorescence| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM436549 | 0.0 | AM436549.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X263908.20, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267092.1 | 1e-117 | PREDICTED: dof zinc finger protein DOF5.4 | ||||
Swissprot | Q8LDR0 | 9e-45 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | F6GTE9 | 1e-147 | F6GTE9_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g04850.t01 | 1e-148 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-32 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008156001 |
Publications ? help Back to Top | |||
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