PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008093001
Common NameLOC100256975, VIT_17s0000g05370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 270aa    MW: 29063.2 Da    PI: 5.468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008093001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11152199455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  GSVIVT01008093001 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.01E-10146203No hitNo description
SuperFamilySSF474595.1E-18146218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18148218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFPVN SASAIGEPTA GLDSSANRDV SVDESTVTEQ  60
SGSRGGGRKR RDVSSEDESS KIVSTSSGSG MNASNGKRMK ISRTPDENGG SKAELEASSV  120
AGEKPAEESK PAEQSKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  180
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMNHTV EGFPLKDLGV QTFDAAAMIY  240
GSQATREYAQ GSQPEWLHMQ VGGSIERAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.139910.0bud| flower| fruit| inflorescence| leaf| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4851821e-109AM485182.2 Vitis vinifera contig VV79X006335.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267633.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV173e-85BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A438DJ930.0A0A438DJ93_VITVI; Transcription factor bHLH79
TrEMBLF6GTC50.0F6GTC5_VITVI; Uncharacterized protein
STRINGVIT_17s0000g05370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.19e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]