PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 270aa MW: 30168.6 Da PI: 5.4414

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01008005001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl GSVIVT01008005001 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50	7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l GSVIVT01008005001 67 RGNFTDQEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.373	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.08E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.68E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.244	62	116	IPR017930	Myb domain
SMART	SM00717	3.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-25	69	117	IPR009057	Homeodomain-like
CDD	cd00167	1.08E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFP 120 TDTSSSLPDL KSSNGYNPNT RPVQASTYAS SAENIAKLLE GWMRNSPKST RTNSEATQNS 180 KNSSEGATTP DALDSLFSFN SSNSDLSLSN DETANFTPET ILFQDESKPN LETQVPLTMI 240 EKWLFDEGAA TQEQEDLIDM SLEDTAQLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-25	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-25	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.10733	0.0	bud\| cell culture\| fruit\| inflorescence\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM487903	0.0	AM487903.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X257196.22, clone ENTAV 115.
GenBank	EF071984	0.0	EF071984.1 Vitis vinifera R2R3 Myb30 transcription factor (MYB30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267946.1	1e-179	R2R3 Myb30 transcription factor
Swissprot	P81392	1e-107	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A438BM43	1e-178	A0A438BM43_VITVI; Myb-related protein 306
TrEMBL	F6GT80	1e-178	F6GT80_VITVI; Uncharacterized protein
STRING	VIT_17s0000g06190.t01	1e-179	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-95	myb domain protein 60

Link Out ? help Back to Top
Phytozome	GSVIVT01008005001

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]