PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007998001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Nin-like
Protein Properties Length: 498aa    MW: 56975.5 Da    PI: 5.4175
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.25.2e-2683133252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        +k +s +++s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ sl
  GSVIVT01007998001  83 SKMLSRNTISQYFYMPITQAARELKVGLTLLKKRCRELGIRRWPHRKLMSL 133
                        578999******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.23567154IPR003035RWP-RK domain
PfamPF020429.3E-2186133IPR003035RWP-RK domain
PROSITE profilePS513756.971272302IPR002885Pentatricopeptide repeat
PfamPF015350.0076277300IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.569303333IPR002885Pentatricopeptide repeat
PfamPF130411.4E-9303352IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.4E-6305340IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.607340374IPR002885Pentatricopeptide repeat
PfamPF144323.5E-33372487IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MESFPTDPLY SPLDIIPSPA VIQEDFGCGY GNELGGWNEV NPAFDHEKQP FLLCDKNGRQ  60
TEEESTKENK ETRKGRDEKS NSSKMLSRNT ISQYFYMPIT QAARELKVGL TLLKKRCREL  120
GIRRWPHRKL MSLQTLIKNV QELGKDEGDG SDQGKLREAI QILEQERKLM EEMPDLQLED  180
KTKRLRQAYF KANYKKRKLM GTMDSSQSSS NSNPQTVEVA MNYTTMDEED EMKSLLSDSF  240
SSTNMMFRGF ICTGKCDGEI HARILRDGHQ SDNLLLTTLM DLYSCCDKFE EACKVFDEIP  300
QWDTVSWNVL ISCCIHNRRT RDALRMFDIM QSTADGFEPD DVTCLLLLQA CANLGALEFG  360
ERVHNYIEEH GYDVHEFVVD DILHPRTDEI YEMLDEIGKQ LKIAGYVAEL SSELHNLGAE  420
EKGNRLSYHS EKLAIAFGVL ATPPGTTIRV AKNLRICVDC HNFAKVLSGA YNREVVIRDR  480
TRFHHFREGQ CSCNGYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D9e-2125938373296PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4719130.0AM471913.1 Vitis vinifera contig VV78X112372.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282066.11e-178PREDICTED: protein RKD1 isoform X1
TrEMBLF6GT761e-179F6GT76_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06250.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-49RWP-RK domain-containing protein