PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007924001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 425aa    MW: 45790.4 Da    PI: 9.9109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007924001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012131150221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ C+  +++k+ L++Hi+
  GSVIVT01007924001 131 RCEVCNIDCNSKDVLEKHIS 150
                        8*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-10111161No hitNo description
SMARTSM004510.064127161IPR003604Zinc finger, U1-type
SMARTSM003550.17130154IPR015880Zinc finger, C2H2-like
PfamPF128742.8E-7131154No hitNo description
SuperFamilySSF576678.51E-9219252No hitNo description
SMARTSM004510.02221255IPR003604Zinc finger, U1-type
SMARTSM003551.7224248IPR015880Zinc finger, C2H2-like
PfamPF128742.4E-7225248No hitNo description
SuperFamilySSF576671.79E-8265313No hitNo description
SMARTSM004518.0E-5279313IPR003604Zinc finger, U1-type
SMARTSM0035565282306IPR015880Zinc finger, C2H2-like
PfamPF128743.5E-5283306No hitNo description
SMARTSM004510.0074384418IPR003604Zinc finger, U1-type
SMARTSM003555.1387411IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.55E-8388418No hitNo description
PfamPF128742.1E-7389411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MFHPHETSYP NFTYLPHQSH STIPNISLGP LFSQPVLHPT SIDPYSHSSL YPSIHVVLGG  60
QATRYEDPNA VSQNWVVKNA DPITYEPAVK PSNEKAVVST SLNSLWSNNQ PLVNDMTIRI  120
PEQTKVILSL RCEVCNIDCN SKDVLEKHIS GKKHNRNLQI HTNQVSTTIS TKDSIGMNTG  180
SLVGQIGSIS HQRILGSAGA AAGQSLVAKR LKLVEGGAVA DSVRTCTICN VACNSQVVFQ  240
KHLTGKKHAA QVGLRPQHLV VQPHSNGIWS KAPKKPKFVQ SAWCEVCKIN CNSSDVFTKH  300
ILGKKHLKNL EKLAEPKKDT STSASTAAQV TTNPIIGPME RLDASKGKST AAVEPGKRPA  360
QLQTQQKDLD IKKQKIVEGG AAAGAVRACT ICNVVCNSQT VFNIHLSGQK HASMVKKLGE  420
STAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4427880.0AM442788.1 Vitis vinifera contig VV78X071556.23, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281421.10.0PREDICTED: zinc finger protein 346
TrEMBLF6GT340.0F6GT34_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06830.t010.0(Vitis vinifera)