PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01007924001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 425aa MW: 45790.4 Da PI: 9.9109 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 131 | 150 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ C+ +++k+ L++Hi+ GSVIVT01007924001 131 RCEVCNIDCNSKDVLEKHIS 150 8*****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.57E-10 | 111 | 161 | No hit | No description |
SMART | SM00451 | 0.064 | 127 | 161 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.17 | 130 | 154 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.8E-7 | 131 | 154 | No hit | No description |
SuperFamily | SSF57667 | 8.51E-9 | 219 | 252 | No hit | No description |
SMART | SM00451 | 0.02 | 221 | 255 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 1.7 | 224 | 248 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.4E-7 | 225 | 248 | No hit | No description |
SuperFamily | SSF57667 | 1.79E-8 | 265 | 313 | No hit | No description |
SMART | SM00451 | 8.0E-5 | 279 | 313 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 65 | 282 | 306 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 3.5E-5 | 283 | 306 | No hit | No description |
SMART | SM00451 | 0.0074 | 384 | 418 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 5.1 | 387 | 411 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.55E-8 | 388 | 418 | No hit | No description |
Pfam | PF12874 | 2.1E-7 | 389 | 411 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 425 aa Download sequence Send to blast |
MFHPHETSYP NFTYLPHQSH STIPNISLGP LFSQPVLHPT SIDPYSHSSL YPSIHVVLGG 60 QATRYEDPNA VSQNWVVKNA DPITYEPAVK PSNEKAVVST SLNSLWSNNQ PLVNDMTIRI 120 PEQTKVILSL RCEVCNIDCN SKDVLEKHIS GKKHNRNLQI HTNQVSTTIS TKDSIGMNTG 180 SLVGQIGSIS HQRILGSAGA AAGQSLVAKR LKLVEGGAVA DSVRTCTICN VACNSQVVFQ 240 KHLTGKKHAA QVGLRPQHLV VQPHSNGIWS KAPKKPKFVQ SAWCEVCKIN CNSSDVFTKH 300 ILGKKHLKNL EKLAEPKKDT STSASTAAQV TTNPIIGPME RLDASKGKST AAVEPGKRPA 360 QLQTQQKDLD IKKQKIVEGG AAAGAVRACT ICNVVCNSQT VFNIHLSGQK HASMVKKLGE 420 STAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM442788 | 0.0 | AM442788.1 Vitis vinifera contig VV78X071556.23, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281421.1 | 0.0 | PREDICTED: zinc finger protein 346 | ||||
TrEMBL | F6GT34 | 0.0 | F6GT34_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g06830.t01 | 0.0 | (Vitis vinifera) |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01007924001 |