PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007389001
Common NameLOC100853160, VIT_07s0151g00450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 416aa    MW: 45569.5 Da    PI: 6.0934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10255303355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01007389001 255 NSHSLAERVRRERISERMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 303
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-11250307No hitNo description
SuperFamilySSF474597.85E-17250320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7255303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDTDGSGDSG FEHKDGSLLD CPSLGIFTSL SSLNGVTSIF TGDYDPPVPL AHNADIIGLP  60
PLKTHDQIDD LYAGNALENQ GMSSTIHLTQ YSSDPRFVEL VPNFPHFSTA GFSEMVTPRC  120
LPKCHNIGCP PDHPLEKNGT RKTSNLQNKT NNCAQMEGCQ IADDGTMELS PIEKKRKRLA  180
DDRSQFAHLK NMEAAQPKDE CLGRQDERKQ KAEQKIVANN CGKLIGAEVK MSSQTGEAPK  240
EDYIHVRAKR GQATNSHSLA ERVRRERISE RMKFLQDLVP GCNKITGKAV MLDEIINYVQ  300
SLQRQVEFLS MKLATVYPEM NVQIERILSS DIHHSKGGTA PILGFGPGMN SAYPIPQVTL  360
QAISPAIESS TLQSSPMSPM PNVWDNELQG IKQMGFTSTA DLENLETSGC TKVQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.55110.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4442970.0AM444297.1 Vitis vinifera contig VV78X085347.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634844.10.0PREDICTED: transcription factor bHLH74 isoform X1
RefseqXP_010645300.10.0PREDICTED: transcription factor bHLH74 isoform X1
RefseqXP_010645301.10.0PREDICTED: transcription factor bHLH74 isoform X1
RefseqXP_010645303.10.0PREDICTED: transcription factor bHLH74 isoform X1
RefseqXP_019073109.10.0PREDICTED: transcription factor bHLH74 isoform X1
RefseqXP_019073110.10.0PREDICTED: transcription factor bHLH74 isoform X1
TrEMBLD7UE770.0D7UE77_VITVI; Uncharacterized protein
STRINGVIT_07s0151g00450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-67bHLH family protein