PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01006140001 | ||||||||
Common Name | VIT_00s2480g00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 65aa MW: 7366.05 Da PI: 10.4172 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 19 | 40 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +Cgk + +L rHi ++ GSVIVT01006140001 19 KCLNCGKQLMQMASLLRHICSC 40 8******************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MFILWDKLAR ERLLKMVIKC LNCGKQLMQM ASLLRHICSC WIPSSVGSIN KTTHWFCKGA 60 AIIK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449592 | 8e-74 | AM449592.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048754.22, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D7U720 | 7e-39 | D7U720_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s2480g00010.t01 | 1e-39 | (Vitis vinifera) |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01006140001 |