PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005236001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 622aa    MW: 73934.5 Da    PI: 11.2055
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005236001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62.1e-234615381290
               FAR1  12 FsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        F +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+
  GSVIVT01005236001 461 FIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLV 538
                        88999999**************************99.9***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-21461538IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
TGIFIIVKIS FFFISIYEFF YIIVRISNEI LFLKITQKSF LITFLELFKK KEKRKGLWKP  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FIMRVDAFRR SMRDGKVVWR  480
RLVCNKEGFR KLRPRRSENR KPRAITREGC KAMIVVKKEK TGKWVVTRFV KEHNHQLVAT  540
PANSRRTVLL SQTPDEKDIK IRELTAELQR ERKRCAAFQE QLDMVLRDME EHSNHLSRNI  600
DGIVQSVREI ESKKIVHSQS K*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4587861e-156AM458786.2 Vitis vinifera contig VV78X114351.12, whole genome shotgun sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-71FAR1 family protein