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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01005087001 |
Common Name | VIT_07s0255g00080 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 172aa MW: 19354.3 Da PI: 9.8175 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01005087001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 60.2 | 3.5e-19 | 75 | 168 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
ffk+ ++s +l sg l++pk+f ++h +g+ s++ + s r W vkl ++ + vlt+GW +Fvk+n L+egD++vF++ g+++
GSVIVT01005087001 75 FFKIVMQSTYLHSGYLRIPKQFSSTHiKGS---SRKAM-LWASDRFWPVKL--LVYPLWsSVLTTGWVDFVKENALREGDVCVFEMYGSNDV 160
99*********************9995433...44455.56799*******..666666679***********************8888888 PP
..EEEEE- CS
B3 91 elvvkvfr 98
l+v++fr
GSVIVT01005087001 161 VLKVTFFR 168
88998886 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MDNDSDSSSG GDELKTKEDQ LHQGNERKCK LKQPVEETIA GVRFSQGTPC LGRLSNKVKA 60 RALKAASKFV SNYPFFKIVM QSTYLHSGYL RIPKQFSSTH IKGSSRKAML WASDRFWPVK 120 LLVYPLWSSV LTTGWVDFVK ENALREGDVC VFEMYGSNDV VLKVTFFRCL A*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-20 | 59 | 168 | 32 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-20 | 59 | 168 | 32 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM445216 | 1e-135 | AM445216.2 Vitis vinifera contig VV78X011820.9, whole genome shotgun sequence. |