PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01005087001 | ||||||||
Common Name | VIT_07s0255g00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19354.3 Da PI: 9.8175 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.5e-19 | 75 | 168 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+ ++s +l sg l++pk+f ++h +g+ s++ + s r W vkl ++ + vlt+GW +Fvk+n L+egD++vF++ g+++ GSVIVT01005087001 75 FFKIVMQSTYLHSGYLRIPKQFSSTHiKGS---SRKAM-LWASDRFWPVKL--LVYPLWsSVLTTGWVDFVKENALREGDVCVFEMYGSNDV 160 99*********************9995433...44455.56799*******..666666679***********************8888888 PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v++fr GSVIVT01005087001 161 VLKVTFFR 168 88998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-22 | 70 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 72 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-19 | 75 | 168 | No hit | No description |
Pfam | PF02362 | 2.5E-16 | 75 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.634 | 75 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-13 | 75 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDNDSDSSSG GDELKTKEDQ LHQGNERKCK LKQPVEETIA GVRFSQGTPC LGRLSNKVKA 60 RALKAASKFV SNYPFFKIVM QSTYLHSGYL RIPKQFSSTH IKGSSRKAML WASDRFWPVK 120 LLVYPLWSSV LTTGWVDFVK ENALREGDVC VFEMYGSNDV VLKVTFFRCL A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-20 | 59 | 168 | 32 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-20 | 59 | 168 | 32 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15212 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445216 | 1e-135 | AM445216.2 Vitis vinifera contig VV78X011820.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019076488.1 | 1e-109 | PREDICTED: B3 domain-containing protein Os01g0723500 isoform X2 | ||||
TrEMBL | D7UE11 | 1e-125 | D7UE11_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0255g00080.t01 | 1e-126 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-20 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01005087001 |