PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005085001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 400aa    MW: 45106.2 Da    PI: 6.6523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005085001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-16331081798
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +pk+f++++g++   s  + l+ +sg +W+v l  ++++g+++l +GW+eFv+   +  g f+vF+++g+s f  ++ +f+
  GSVIVT01005085001  33 GIPKRFVSRYGKN--LSNIMFLKVPSGAVWQVGL--KRGDGEVWLDGGWREFVEYYSIGYGHFLVFRYEGNSIF--HILIFD 108
                        6*********966..888999999**********..**********************************9999..888886 PP
2B3521.2e-163043921298
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++ l +p  f+e++ +    +k +tl  ++gr+W+  ++   r++++r   +l +GWk Fv++n+Lk gD++vF l+++ +  l+v +f 
  GSVIVT01005085001 304 SRHGLNIPIWFVERYFKT--DDKSITLWGSDGRTWSTSYRLgrRRNGKRvaELLYSGWKIFVQDNQLKLGDVCVFVLIKSPGILLKVVIFG 392
                        3488***********744..5678***************9987555555678999**********************99877667777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.9E-1317110IPR003340B3 DNA binding domain
PROSITE profilePS5086313.39417110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-2020117IPR015300DNA-binding pseudobarrel domain
CDDcd100178.06E-1721108No hitNo description
Gene3DG3DSA:2.40.330.104.0E-2226110IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-1332108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21285394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-20286394IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-18290391No hitNo description
SMARTSM010191.7E-10292394IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196293394IPR003340B3 DNA binding domain
PfamPF023622.1E-14304391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MTSIPWWHFV SSSSSVFLHH LRIDVNGRCF SQGIPKRFVS RYGKNLSNIM FLKVPSGAVW  60
QVGLKRGDGE VWLDGGWREF VEYYSIGYGH FLVFRYEGNS IFHILIFDMT ASEIEYPSTN  120
APHYEEPSSN IGGSLPPKME EIDNDVSVEI LDVFPARQTT KEKDTINISS SEEEFTPCLP  180
EIVEIESDVS VGTFDVFPTS QNPEEKEVRL FFSPLEKKHN SSRKTDTPPM SDLLFHISAQ  240
RIGHDFHAKE SCGTVAAIQR NVLSGVLPPV TASKEVGALQ RAIAFNPENP FFRAKMGPSY  300
LGPSRHGLNI PIWFVERYFK TDDKSITLWG SDGRTWSTSY RLGRRRNGKR VAELLYSGWK  360
IFVQDNQLKL GDVCVFVLIK SPGILLKVVI FGNSEDADH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.196040.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4738420.0AM473842.2 Vitis vinifera contig VV78X260904.29, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076545.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLF6I7D40.0F6I7D4_VITVI; Uncharacterized protein
STRINGVIT_07s0255g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-34B3 family protein