PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01004930001 | ||||||||
Common Name | LOC100266054, VIT_01s0244g00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23040.2 Da PI: 8.0681 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.1e-09 | 52 | 99 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k K +L + ++Y+ksLq GSVIVT01004930001 52 SHSLAERARREKISERMKFLQSLVPGC----DKIIGKTLVLDEIINYVKSLQ 99 8*************************9....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.72E-8 | 46 | 103 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-15 | 46 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.538 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-15 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 52 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-6 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVRKRKKADF EEERDVEEKK GKAEKKRKKK VVKEVPSGFV HVRARRGEAT DSHSLAERAR 60 REKISERMKF LQSLVPGCDK IIGKTLVLDE IINYVKSLQN QVEFLVGKLA SISPMLIGHE 120 ANLDSSTLQS ENLCSFGPPL PSLLACNSTQ LNSYAETSLT SSFSLQQDHL SSVVSQNDGI 180 ILWDMDDQEQ SLLDQYGFSN RYSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 28 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.7662 | 0.0 | fruit |
Function -- GeneRIF ? help Back to Top | ||||||
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ823168 | 0.0 | JQ823168.1 Vitis vinifera basic helix-loop-helix (CEB1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267465.1 | 1e-149 | PREDICTED: transcription factor bHLH137 | ||||
Swissprot | Q93W88 | 2e-43 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | F6HWP8 | 1e-147 | F6HWP8_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0244g00010.t01 | 1e-148 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01004930001 |
Entrez Gene | 100266054 |
Publications ? help Back to Top | |||
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