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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSVIVT01004382001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
AP2 |
| Protein Properties |
Length: 636aa MW: 70074.2 Da PI: 8.2104 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01004382001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 49.4 | 1.1e-15 | 396 | 447 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
GSVIVT01004382001 396 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 447
57****************988532...5************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010080 | Biological Process | regulation of floral meristem growth |
| GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
| GO:0035265 | Biological Process | organ growth |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 636 aa
Download sequence Send
to blast |
MAPVTNWLSF SLSPMEMLRC SESQIMPYES SSAASPHYYV DNFYANGWTN PKPQVMYTEG 60
DDYQVKEAAT PSITNSSMLT SFVDPQLHHQ QVPKLEDFLG GDSSSLVRYS ESQTETQDSS 120
LTHIYDHGSA YFNEQQDLKA IAATAGFQAF STNSGSEVED SSSIGRTQLA SSDFPGHSIE 180
SGNELAFSHC PTGALSLGVT TTTTTTQRSD QQAIVSADSD CSKKIADTFG QRTSIYRGVT 240
RHRWTGRYEA HLWDNSSRRE GQARKGRQGL SLSHILYNCT SFTALSLSLC FPSFIDLIRW 300
AAILFMWVCF VVFSFHPTSS LSSLPSPIMY LGGYDKEEKA ARAYDLAALK YWGASATTNF 360
PVSNYTKELE EMKHVTKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN 420
KDLYLGTFAT EEEAAEAYDI AAIKFRGVNA VTNFEMNRYD VEAIANSALP IGGAAKRLKL 480
SLESDQKPCL NLDQQTQSSA SSSGITFGAI QPIPAIPYHW DYNNVVCLSI SNVLGFLCRH 540
FLVKSSPAQP TLRFRKVRPS VPRPGGQHLK WARSSGPGER PSWPHPSSLC AHNTHPTNRT 600
PCSYPRSASP PPLGPLPPSQ PSASGSERRR PWGPD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM459776 | 0.0 | AM459776.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X002248.2, clone ENTAV 115. |
| Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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