PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004382001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 636aa    MW: 70074.2 Da    PI: 8.2104
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004382001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-15396447155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSVIVT01004382001 396 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 447
                        57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.84E-13234363No hitNo description
PROSITE profilePS5103215.277235361IPR001471AP2/ERF domain
SMARTSM003803.5E-17235367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-13235257IPR001471AP2/ERF domain
PRINTSPR003678.5E-6236247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-13325362IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-9329363IPR016177DNA-binding domain
PRINTSPR003678.5E-6343363IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17396456IPR016177DNA-binding domain
PfamPF008475.9E-10396447IPR001471AP2/ERF domain
CDDcd000183.56E-11396455No hitNo description
PROSITE profilePS5103219.151397455IPR001471AP2/ERF domain
SMARTSM003801.6E-31397461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18397455IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAPVTNWLSF SLSPMEMLRC SESQIMPYES SSAASPHYYV DNFYANGWTN PKPQVMYTEG  60
DDYQVKEAAT PSITNSSMLT SFVDPQLHHQ QVPKLEDFLG GDSSSLVRYS ESQTETQDSS  120
LTHIYDHGSA YFNEQQDLKA IAATAGFQAF STNSGSEVED SSSIGRTQLA SSDFPGHSIE  180
SGNELAFSHC PTGALSLGVT TTTTTTQRSD QQAIVSADSD CSKKIADTFG QRTSIYRGVT  240
RHRWTGRYEA HLWDNSSRRE GQARKGRQGL SLSHILYNCT SFTALSLSLC FPSFIDLIRW  300
AAILFMWVCF VVFSFHPTSS LSSLPSPIMY LGGYDKEEKA ARAYDLAALK YWGASATTNF  360
PVSNYTKELE EMKHVTKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  420
KDLYLGTFAT EEEAAEAYDI AAIKFRGVNA VTNFEMNRYD VEAIANSALP IGGAAKRLKL  480
SLESDQKPCL NLDQQTQSSA SSSGITFGAI QPIPAIPYHW DYNNVVCLSI SNVLGFLCRH  540
FLVKSSPAQP TLRFRKVRPS VPRPGGQHLK WARSSGPGER PSWPHPSSLC AHNTHPTNRT  600
PCSYPRSASP PPLGPLPPSQ PSASGSERRR PWGPD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.49020.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4597760.0AM459776.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X002248.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635541.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-83AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLW9T1160.0W9T116_9ROSA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010113448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-180AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]