PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01003701001 | ||||||||
Common Name | VITISV_026466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 21097.4 Da PI: 8.8674 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 10 | 56 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq GSVIVT01003701001 10 DHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 56 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.72 | 6 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-18 | 10 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-11 | 10 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-18 | 10 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.69E-12 | 11 | 60 | No hit | No description |
SMART | SM00353 | 2.7E-15 | 12 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd02116 | 0.00711 | 117 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MRRTSSHAQD HIMAERKRRE KLSQRFIALS ALVPGLKKMD KASVLGDAIK YLKQLQERVK 60 SLEEQMKETT VESVVFIKKS QLSADDETSS CDENFDGCRE DAVRDIEARV SDKNVLIRIH 120 CKKQKGFVAK VLGEIEEHHL SVVNSSVLPF GKHAMDITVV AQMGDELQVT VKDLVNNLRL 180 AFLKFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 3e-15 | 10 | 59 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | ERKRRE |
2 | 15 | 20 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM434964 | 0.0 | AM434964.2 Vitis vinifera contig VV79X001348.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270448.2 | 1e-133 | PREDICTED: transcription factor bHLH18 | ||||
Refseq | XP_019076579.1 | 1e-133 | PREDICTED: transcription factor bHLH18 | ||||
Swissprot | Q9T072 | 1e-61 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A438KPR7 | 1e-131 | A0A438KPR7_VITVI; Transcription factor bHLH25 | ||||
TrEMBL | D7SSH7 | 1e-132 | D7SSH7_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0205g00160.t01 | 1e-133 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01003701001 |