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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01003683001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 380aa MW: 42354.7 Da PI: 9.2936 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01003683001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.5 | 4.8e-20 | 112 | 201 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+ aLi+a+re++ +lrrg+l++++W++vs+++ + +++++qC++k+e+l++ry+++k++ + s++++f +++
GSVIVT01003683001 112 CWTHDETVALIDAYREKWYSLRRGNLRAADWDAVSAAVslrcHLAAPSKTSVQCRHKIEKLRQRYRAEKQRCVAYPGGFCSSWVFFANMD 201
8*************************************98655555699**********************99998999999****9997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MFHLHGLLPI FGLPLLLATF LVILGFAPPA CHDTTPPTHP PSSNPLFFTP SSTPTSTHHA 60 NHLHLHLHFH LHLHLFLSLS STTTTTTLLS CASLFYVPNP MSAPARKFPA PCWTHDETVA 120 LIDAYREKWY SLRRGNLRAA DWDAVSAAVS LRCHLAAPSK TSVQCRHKIE KLRQRYRAEK 180 QRCVAYPGGF CSSWVFFANM DSMEHGSNQS QTSDDPNPNF DFDGNKFHLK SSPNPGFDQE 240 EGCGLKSVGD GSLVPPGPRA NNCGKINGNS NPKLDSRVLN GRSGSLRLGF GKESGVRGIK 300 RETDPISEMV SSIRLLGEGF VKMEKMKMDM AREIEKMRME MEMKRSEMLL ESQQQIVDTF 360 MKGFLEKKKK KAKMVPSEF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM453288 | 0.0 | AM453288.2 Vitis vinifera contig VV79X002487.2, whole genome shotgun sequence. |