PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003551001
Common NameLOC100243049, VIT_07s0197g00060
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 383aa    MW: 42090 Da    PI: 5.9687
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003551001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1048.7e-33245300156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  GSVIVT01003551001 245 KQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVEGLTNDEVKSHLQKYRLH 300
                        79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.17242302IPR017930Myb domain
SuperFamilySSF466893.94E-18243303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-30244304IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-27245300IPR006447Myb domain, plants
PfamPF002495.9E-8247298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAELRLDLNP GCELKTVSSF LREVSMMRDS SEKLSKLDDY VKGLEDEMRK IDGFKRELPL  60
CMLLLNDAIL RLREEAMQCT ESEGGHVTEE FIPLKGRSEG DEGAEMGKDS SDKRSWMSCA  120
QLWSCNRSSD NNNKKSVLEF QQRNEEDNNS GSENPIRPCS YGNRAGAFVP FKVSSGFPAK  180
GDKEVVPVAG LSLMTPMVEV DPNNSNSKCG NSGETGSGSV STLLTDSMRL QCKSQQQPPQ  240
QGIRKQRRCW SPELHRRFVN ALQQLGGSQA ATPKQIRELM QVEGLTNDEV KSHLQKYRLH  300
VRRIPSTSAA PANGSWVPQV QVGDVSKKNI SQSGSPQGPL HLAGSAKGVS GTGGDSMEYD  360
EDDKSEGHSW KDQLHKPGED DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-15245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-15245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-15245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-15245298154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.155310.0cell culture| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4557390.0AM455739.2 Vitis vinifera contig VV78X227521.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264629.20.0PREDICTED: myb family transcription factor EFM isoform X1
TrEMBLF6H7R10.0F6H7R1_VITVI; Uncharacterized protein
STRINGVIT_07s0197g00060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-64G2-like family protein