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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01003212001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 601aa MW: 66472 Da PI: 7.6314 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01003212001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 57.5 | 2.4e-18 | 330 | 429 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g +W +++++ +++s++yvl+ G ++ +L++gD+v+F++ +
GSVIVT01003212001 330 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDAKGHEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-P 419
89**************************666667778***************9989999999***9.********************766.7 PP
EE..EEEEE- CS
B3 89 efelvvkvfr 98
e++lv+++++
GSVIVT01003212001 420 EGKLVMGFRK 429
7777777776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 601 aa
Download sequence Send
to blast |
MSSSTVKICF NSECTDRKSE RLKKGWRTRS GDCVELCDRC GSLYDEGRFC ETFHSNASGW 60 RGCKSCAKRV HCGCIASIHS FTLLDTGGIE CIPCARKNVV LTPNPAWPPH FFLPLPERLK 120 DPVKNWSQSQ PVWRASNLFN TSIPQSDLRP RMPSEADLST GVDRLIVSER SSASSMEKKK 180 IEDSSERSMN GGLKLGALEM LENGNSGTNC EEQPASCVNI PQQSSSLNDD HSAPLLSLAV 240 PYASSSETNG QTVVSGTLSQ PTPSPPLAKK FSGHPHNGVD SSGEAQVRNG RPRGDARGRN 300 QLLPRYWPRI TDQELQQISG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS 360 QPEGLPLKVQ DAKGHEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRLEPE 420 GKLVMGFRKA STAPSSDQGN ETIKTGNGGS THGDADLADP ASAWSKVDKS GYIAKEALGA 480 KSSIPRKRKN STLGSKSKRL RIENEDLIEL KLTWEEAQGL LRPPLNHVPN VVVIEGYEFE 540 EYEQMPILCS ICISEKIQWA QCEDCFKWRK LPADVCLSSR WTCSENSWDP ERYNHQISTI 600 P
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5yzy_C | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-65 | 308 | 433 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-65 | 308 | 433 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM488723 | 0.0 | AM488723.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X113969.14, clone ENTAV 115. |