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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01003119001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 400aa MW: 44570.2 Da PI: 9.4183 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSVIVT01003119001 72 FVCEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ GSVIVT01003119001 148 WKCEKCSKIYAVQSDWKAHSKTC 170 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.33E-6 | 71 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 71 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.1E-5 | 72 | 94 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 136 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.33E-6 | 143 | 168 | No hit | No description |
SMART | SM00355 | 170 | 148 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MSNSTSLSEE ASVSSGTRVQ DFSSLNPVVS GISSQQQNQQ KIKKKRNLPG NPDPDAEVIA 60 LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNSKEIKK KAYVCPEPTC 120 VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKIYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRKDSFI THRAFCDALA EESARLSIKP EIHHLQIPSP ISPQFFQEQP PPPPPTQQKN 240 LMTSPFQNFH VSTQPTSAHL SATALLQKAA TVGATANISF TGSSQSHMSR LHMAELGSFP 300 HVGAGISPEY LGFASGNLST WQKSDRLTRD FLGLTGESGG SVNVSVNMRD MLQYTGGVEF 360 QPYDRDHSLL KAHGFETWGD YRTSNDEWTS IADHVAWLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 144 | 207 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 144 | 207 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.28731 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461724 | 0.0 | AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010646129.1 | 0.0 | PREDICTED: protein indeterminate-domain 12 | ||||
Swissprot | O22759 | 1e-140 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | F6HBI4 | 0.0 | F6HBI4_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0179g00170.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-135 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01003119001 |
Publications ? help Back to Top | |||
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