PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003119001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 400aa    MW: 44570.2 Da    PI: 9.4183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-057294123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  GSVIVT01003119001 72 FVCEICNKGFQRDQNLQLHRRGH 94
                       89*******************88 PP
2zf-C2H212.50.00043148170123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H +t+
  GSVIVT01003119001 148 WKCEKCSKIYAVQSDWKAHSKTC 170
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-67194No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.1E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-6143168No hitNo description
SMARTSM00355170148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSNSTSLSEE ASVSSGTRVQ DFSSLNPVVS GISSQQQNQQ KIKKKRNLPG NPDPDAEVIA  60
LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNSKEIKK KAYVCPEPTC  120
VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKIYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRKDSFI THRAFCDALA EESARLSIKP EIHHLQIPSP ISPQFFQEQP PPPPPTQQKN  240
LMTSPFQNFH VSTQPTSAHL SATALLQKAA TVGATANISF TGSSQSHMSR LHMAELGSFP  300
HVGAGISPEY LGFASGNLST WQKSDRLTRD FLGLTGESGG SVNVSVNMRD MLQYTGGVEF  360
QPYDRDHSLL KAHGFETWGD YRTSNDEWTS IADHVAWLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36144207366Zinc finger protein JACKDAW
5b3h_F3e-36144207366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.287310.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617240.0AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646129.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-140IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLF6HBI40.0F6HBI4_VITVI; Uncharacterized protein
STRINGVIT_00s0179g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-135indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]