PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003118001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 362aa    MW: 41889.3 Da    PI: 6.2482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003118001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34801712102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++i++d++ ++++sws+ g+sfvv+d++ f++++Lpk Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++l
  GSVIVT01003118001  80 FLTKTFDIVDDPASDHVVSWSRAGSSFVVWDPHAFSTNLLPKNFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQRHL 162
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  GSVIVT01003118001 163 LKNIRRRKT 171
                        *******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-6176169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3776169IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.94E-3576169IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-1880103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3180169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340119143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MECHHQLHNG FNYLPNEESF VWSKRIIQTL TFSLHLILNL TFTLSKFFEI FLKYSSPQSG  60
EPPVVPQPVE GLHDAGPPPF LTKTFDIVDD PASDHVVSWS RAGSSFVVWD PHAFSTNLLP  120
KNFKHNNFSS FVRQLNTYGF RKIDPDRWEF ANEGFIRGQR HLLKNIRRRK TPSQAPPPHQ  180
ALDPFDRLQR DKHVLMMELV KLRQQQQNTR ITLQAMEQRL QGTEIKQQQM MNFLARAMQN  240
PAFIQQLVQQ KERRKEIVEA ISKKRRRPID QGTRNGFEVS ELEALAFEMQ GLGRPRKELE  300
DHEELDPPES EDKELDEGFW EELLNERFGC PSSLPGAEGE EEEEDVNVLA GRFGYLGSSP  360
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-257517112122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252266RRKEIVEAISKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96180.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-145AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073572.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A438KHG40.0A0A438KHG4_VITVI; Heat stress transcription factor A-6b
STRINGVIT_00s0179g00150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B