PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01002745001

Common Name

LOC100854363, VIT_00s0868g00010

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

GeBP

Protein Properties

Length: 438aa MW: 48785.9 Da PI: 4.7069

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01002745001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.8	1.5e-37	202	299	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqr+wseeDe+ +L+G+id+ ak+g+ p+ d+++fy+fvk+ ++ ++s+ ql++K rrLKkK+ ++v++ak g++p+f+k+h+q +fel GSVIVT01002745001 202 MFQRIWSEEDELGILKGMIDYSAKNGSVPYPngDMNEFYDFVKNTLHGDFSRVQLTDKARRLKKKYSNNVSRAKLGEDPTFQKPHEQRAFEL 293 79***********************777667******************************************************* PP DUF573 92 skkiWg 97 skkiWg GSVIVT01002745001 294 SKKIWG 299 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-34	203	299	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MAPKRPPPAE DPPAPSSTSE EEEENEENEE NEEEEEEEEE SSPEESSEEE EEGEENKSTV 60 LTPPPAVDKK ASSNKLVATT PAKSTPQSSS EDEEDGSESE SESDSPPKSR RSSRGADPTI 120 KPIATKPMEE TPKSKKARSK PGVSVTPSPV KSSPVKPSNS KRPGEIGLER KESKRAKKKE 180 PEAEAEEEED GKKTGDDSKK QMFQRIWSEE DELGILKGMI DYSAKNGSVP YPNGDMNEFY 240 DFVKNTLHGD FSRVQLTDKA RRLKKKYSNN VSRAKLGEDP TFQKPHEQRA FELSKKIWGG 300 EGNSVGVQQS NKANGKARKN QKPNKAVKVE DVEVLSVING DDKEAVKLEN EPKSEPPKKY 360 SLVVSDFTRI NESVGMSSSM DRAIEIGLGL LSEPLKAELK EKWKELEDEE FQLYMKKLDL 420 IQMEARVSMQ AYRAKHQ*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MAPKRPPPAE DPPAPSSTSE EEEENEENEE NEEEEEEEEE SSPEESSEEE EEGEENKSTV  60
LTPPPAVDKK ASSNKLVATT PAKSTPQSSS EDEEDGSESE SESDSPPKSR RSSRGADPTI  120
KPIATKPMEE TPKSKKARSK PGVSVTPSPV KSSPVKPSNS KRPGEIGLER KESKRAKKKE  180
PEAEAEEEED GKKTGDDSKK QMFQRIWSEE DELGILKGMI DYSAKNGSVP YPNGDMNEFY  240
DFVKNTLHGD FSRVQLTDKA RRLKKKYSNN VSRAKLGEDP TFQKPHEQRA FELSKKIWGG  300
EGNSVGVQQS NKANGKARKN QKPNKAVKVE DVEVLSVING DDKEAVKLEN EPKSEPPKKY  360
SLVVSDFTRI NESVGMSSSM DRAIEIGLGL LSEPLKAELK EKWKELEDEE FQLYMKKLDL  420
IQMEARVSMQ AYRAKHQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.8759	0.0	bud\| flower\| fruit\| inflorescence\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM424762	0.0	AM424762.2 Vitis vinifera contig VV78X141012.31, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003635491.1	0.0	PREDICTED: STOREKEEPER protein
TrEMBL	D7TRY0	0.0	D7TRY0_VITVI; Uncharacterized protein
STRING	VIT_00s0868g00010.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4222	5	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-28	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	GSVIVT01002745001
Entrez Gene	100854363