PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002066001
Common NameLOC100855171, VIT_10s0597g00050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 201aa    MW: 22990.2 Da    PI: 9.527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002066001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32231212102
                        HHHHHHHHHC.......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
       HSF_DNA-bind   2 Flkklyeile.......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                        Fl k+y++le        +  ++++sw+++g+ fvv+ ++ef++ +Lp+yFkh+nf+SFvRQLn+YgFkk+ +++         weF+h++F
  GSVIVT01002066001  23 FLLKTYDLLEgvidtsnGDGGQRIVSWNADGTGFVVWSPDEFSEIMLPRYFKHNNFSSFVRQLNTYGFKKIASKR---------WEFQHDKF 105
                        99********8887765557899*************************************************999.........******** PP

                        XXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  87 kkgkkellekikrkks 102
                        ++g +++l +i rkk 
  GSVIVT01002066001 106 QRGCRDMLAEITRKKC 121
                        *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3415113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-2719119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-4019119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2923119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-113053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-116880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-118193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAEELRHSPG GKSGTRTKSP APFLLKTYDL LEGVIDTSNG DGGQRIVSWN ADGTGFVVWS  60
PDEFSEIMLP RYFKHNNFSS FVRQLNTYGF KKIASKRWEF QHDKFQRGCR DMLAEITRKK  120
CEPSIFPPFL KASKDNTASS ADQKSNCLSL MEENESLRRQ NLDLQMQISQ LKALEMKLMD  180
CLNVSIHGHH HPHNKLRRLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B5e-16211192104Putative transcription factor
5d5x_B5e-16211192104Putative transcription factor
5d5x_E5e-16211192104Putative transcription factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4807790.0AM480779.2 Vitis vinifera contig VV78X202140.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655428.21e-151PREDICTED: heat stress transcription factor B-2a
TrEMBLD7TRW71e-149D7TRW7_VITVI; Uncharacterized protein
STRINGVIT_10s0597g00050.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-41heat shock transcription factor B2A